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2013
He S, Ivanova N, Kirton E, Allgaier M, Bergin C, Scheffrahn RH, et al. Comparative metagenomic and metatranscriptomic analysis of hindgut paunch microbiota in wood- and dung-feeding higher termites. PLoS ONE. 2013;8(4):e61126. Abstract
2011
Klenk H-, Lapidus A, Chertkov O, Copeland A, Glavina Del Rio T, Nolan M, et al. Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Raine. Stand Genomic Sci. 2011;5(1):121-34. Abstract
2010
Ivanova N, Tringe SG, Liolios K, Liu W-, Morrison N, Hugenholtz P, et al. A call for standardized classification of metagenome projects. Environ Microbiol. 2010;12(7):1803-5.
He S, Kunin V, Haynes M, Martin HG, Ivanova N, Rohwer F, et al. Metatranscriptomic array analysis of 'Candidatus Accumulibacter phosphatis'-enriched enhanced biological phosphorus removal sludge. Environ Microbiol. 2010;12(5):1205-17. Abstract
Allgaier M, Reddy A, Park JI, Ivanova N, D'haeseleer P, Lowry S, et al. Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community. PLoS ONE. 2010;5(1):e8812. Abstract
Spring S, Scheuner C, Lapidus A, Lucas S, Glavina Del Rio T, Tice H, et al. The Genome Sequence of Methanohalophilus mahii SLP Reveals Differences in the Energy Metabolism among Members of the Methanosarcinaceae Inhabiting Freshwater and Saline Environments. Archaea. 2010;2010:690737. Abstract
Mavromatis K, Sikorski J, Pabst E, Teshima H, Lapidus A, Lucas S, et al. Complete genome sequence of Vulcanisaeta distributa type strain (IC-017). Stand Genomic Sci. 2010;3(2):117-25. Abstract
Pitluck S, Yasawong M, Munk C, Nolan M, Lapidus A, Lucas S, et al. Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228P). Stand Genomic Sci. 2010;3(2):108-16. Abstract
Sikorski J, Munk C, Lapidus A, Djao OD, Lucas S, Glavina Del Rio T, et al. Complete genome sequence of Sulfurimonas autotrophica type strain (OK10). Stand Genomic Sci. 2010;3(2):194-202. Abstract
Mavromatis K, Yasawong M, Chertkov O, Lapidus A, Lucas S, Nolan M, et al. Complete genome sequence of Spirochaeta smaragdinae type strain (SEBR 4228). Stand Genomic Sci. 2010;3(2):136-44. Abstract
Brambilla E, Djao OD, Daligault H, Lapidus A, Lucas S, Hammon N, et al. Complete genome sequence of Methanoplanus petrolearius type strain (SEBR 4847). Stand Genomic Sci. 2010;3(2):203-11. Abstract
Nolan M, Sikorski J, Davenport K, Lucas S, Glavina Del Rio T, Tice H, et al. Complete genome sequence of Ferrimonas balearica type strain (PAT). Stand Genomic Sci. 2010;3(2):174-82. Abstract
Yasawong M, Teshima H, Lapidus A, Nolan M, Lucas S, Glavina Del Rio T, et al. Complete genome sequence of Arcanobacterium haemolyticum type strain (11018). Stand Genomic Sci. 2010;3(2):126-35. Abstract
Kiss H, Cleland D, Lapidus A, Lucas S, Glavina Del Rio T, Nolan M, et al. Complete genome sequence of 'Thermobaculum terrenum' type strain (YNP1). Stand Genomic Sci. 2010;3(2):153-62. Abstract
2009
Mavromatis K, Ivanova N, Anderson I, Lykidis A, Hooper SD, Sun H, et al. Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii. PLoS ONE. 2009;4(1):e4192. Abstract
2008
Kunin V, He S, Warnecke F, Peterson BS, Martin HG, Haynes M, et al. A bacterial metapopulation adapts locally to phage predation despite global dispersal. Genome Res. 2008;18(2):293-7. Abstract
Kunin V, Raes J, Harris KJ, Spear JR, Walker JJ, Ivanova N, et al. Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat. Mol Syst Biol. 2008;4:198. Abstract
2007
Warnecke F, Luginbühl P, Ivanova N, Ghassemian M, Richardson TH, Stege JT, et al. Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature. 2007;450(7169):560-5. Abstract
Marcy Y, Ouverney C, Bik EM, Lösekann T, Ivanova N, Martin HG, et al. Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth. Proc Natl Acad Sci USA. 2007;104(29):11889-94. Abstract
Mavromatis K, Ivanova N, Barry K, Shapiro H, Goltsman E, McHardy AC, et al. Use of simulated data sets to evaluate the fidelity of metagenomic processing methods. Nat Methods. 2007;4(6):495-500. Abstract
2006
Martín HG, Ivanova N, Kunin V, Warnecke F, Barry KW, McHardy AC, et al. Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities. Nat Biotechnol. 2006;24(10):1263-9. Abstract
Markowitz VM, Ivanova N, Palaniappan K, Szeto E, Korzeniewski F, Lykidis A, et al. An experimental metagenome data management and analysis system. Bioinformatics. 2006;22(14):e359-67. Abstract
Markowitz VM, Korzeniewski F, Palaniappan K, Szeto E, Werner G, Padki A, et al. The integrated microbial genomes (IMG) system. Nucleic Acids Res. 2006;34(Database issue):D344-8. Abstract