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2012
Lundberg DS, Lebeis SL, Paredes SH, Yourstone S, Gehring J, Malfatti S, et al. Defining the core Arabidopsis thaliana root microbiome. Nature. 2012;488(7409):86-90. Abstract
2010
He S, Kunin V, Haynes M, Martin HG, Ivanova N, Rohwer F, et al. Metatranscriptomic array analysis of 'Candidatus Accumulibacter phosphatis'-enriched enhanced biological phosphorus removal sludge. Environ Microbiol. 2010;12(5):1205-17. Abstract
Engelbrektson A, Kunin V, Wrighton KC, Zvenigorodsky N, Chen F, Ochman H, et al. Experimental factors affecting PCR-based estimates of microbial species richness and evenness. ISME J. 2010;4(5):642-7. Abstract
Kunin V, Engelbrektson A, Ochman H, Hugenholtz P. Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. Environ Microbiol. 2010;12(1):118-23. Abstract
2009
Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, Ivanova NN, et al. A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature. 2009;462(7276):1056-60. Abstract
Mavromatis K, Ivanova N, Anderson I, Lykidis A, Hooper SD, Sun H, et al. Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii. PLoS ONE. 2009;4(1):e4192. Abstract
2008
Kunin V, Copeland A, Lapidus A, Mavromatis K, Hugenholtz P. A bioinformatician's guide to metagenomics. Microbiol Mol Biol Rev. 2008;72(4):557-78, Table of Contents. Abstract
Elkins JG, Podar M, Graham DE, Makarova KS, Wolf Y, Randau L, et al. A korarchaeal genome reveals insights into the evolution of the Archaea. Proc Natl Acad Sci USA. 2008;105(23):8102-7. Abstract
Sorek R, Kunin V, Hugenholtz P. CRISPR--a widespread system that provides acquired resistance against phages in bacteria and archaea. Nat Rev Microbiol. 2008;6(3):181-6. Abstract
Kunin V, He S, Warnecke F, Peterson BS, Martin HG, Haynes M, et al. A bacterial metapopulation adapts locally to phage predation despite global dispersal. Genome Res. 2008;18(2):293-7. Abstract
Kunin V, Raes J, Harris KJ, Spear JR, Walker JJ, Ivanova N, et al. Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat. Mol Syst Biol. 2008;4:198. Abstract
2007
Warnecke F, Luginbühl P, Ivanova N, Ghassemian M, Richardson TH, Stege JT, et al. Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature. 2007;450(7169):560-5. Abstract
Kunin V, Sorek R, Hugenholtz P. Evolutionary conservation of sequence and secondary structures in CRISPR repeats. Genome Biol. 2007;8(4):R61. Abstract
2006
Martín HG, Ivanova N, Kunin V, Warnecke F, Barry KW, McHardy AC, et al. Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities. Nat Biotechnol. 2006;24(10):1263-9. Abstract
Markowitz VM, Ivanova N, Palaniappan K, Szeto E, Korzeniewski F, Lykidis A, et al. An experimental metagenome data management and analysis system. Bioinformatics. 2006;22(14):e359-67. Abstract