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2012
Angly FE, Willner D, Rohwer F, Hugenholtz P, Tyson GW. Grinder: a versatile amplicon and shotgun sequence simulator. Nucleic acids research. 2012. Abstract
2011
Treangen TJ, Sommer DD, Angly FE, Koren S, Pop M. Next Generation Sequence Assembly with AMOS. Curr Protoc Bioinformatics. 2011;Chapter 11:Unit11.8. Abstract
Skennerton CT, Angly FE, Breitbart M, Bragg L, He S, McMahon KD, et al. Phage Encoded H-NS: A Potential Achilles Heel in the Bacterial Defence System. PLoS ONE. 2011;6(5):e20095. Abstract
2010
Reyes A, Haynes M, Hanson N, Angly FE, Heath AC, Rohwer F, et al. Viruses in the faecal microbiota of monozygotic twins and their mothers. Nature. 2010;466(7304):334-8. Abstract
Willner D, Furlan M, Schmieder R, Grasis JA, Pride DT, Relman DA, et al. Microbes and Health Sackler Colloquium: Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity. Proceedings of the National Academy of Sciences of the United States of America. 2010. Abstract
Rodriguez-Brito B, Li L, Wegley L, Furlan M, Angly FE, Breitbart M, et al. Viral and microbial community dynamics in four aquatic environments. ISME J. 2010;4(6):739-51. Abstract
2009
Angly FE, Willner D, Prieto-Davó A, Edwards RA, Schmieder R, Vega-Thurber R, et al. The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes. PLoS Comput Biol. 2009;5(12):e1000593. Abstract
Angly FE, Youle M, Nosrat B, Srinagesh S, Rodriguez-Brito B, McNairnie P, et al. Genomic analysis of multiple Roseophage SIO1 strains. Environ Microbiol. 2009;11(11):2863-73. Abstract
Thurber RV, Willner-Hall D, Rodriguez-Mueller B, Desnues C, Edwards RA, Angly FE, et al. Metagenomic analysis of stressed coral holobionts. Environ Microbiol. 2009;11(8):2148-63. Abstract
Willner D, Furlan M, Haynes M, Schmieder R, Angly FE, Silva J, et al. Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals. PLoS ONE. 2009;4(10):e7370. Abstract
2008
Vega Thurber RL, Barott KL, Hall D, Liu H, Rodriguez-Mueller B, Desnues C, et al. Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa. Proc Natl Acad Sci USA. 2008;105(47):18413-8. Abstract
Breitbart M, Haynes M, Kelley S, Angly FE, Edwards RA, Felts B, et al. Viral diversity and dynamics in an infant gut. Res Microbiol. 2008;159(5):367-73. Abstract
Dinsdale EA, Edwards RA, Hall D, Angly FE, Breitbart M, Brulc JM, et al. Functional metagenomic profiling of nine biomes. Nature. 2008;452(7187):629-32. Abstract
Desnues C, Rodriguez-Brito B, Rayhawk S, Kelley S, Tran T, Haynes M, et al. Biodiversity and biogeography of phages in modern stromatolites and thrombolites. Nature. 2008;452(7185):340-3. Abstract
Dinsdale EA, Pantos O, Smriga S, Edwards RA, Angly FE, Wegley L, et al. Microbial ecology of four coral atolls in the Northern Line Islands. PLoS ONE. 2008;3(2):e1584. Abstract
Qu A, Brulc JM, Wilson MK, Law BF, Theoret JR, Joens LA, et al. Comparative metagenomics reveals host specific metavirulomes and horizontal gene transfer elements in the chicken cecum microbiome. PLoS ONE. 2008;3(8):e2945. Abstract
2007
Hoffmann KH, Rodriguez-Brito B, Breitbart M, Bangor D, Angly FE, Felts B, et al. Power law rank-abundance models for marine phage communities. FEMS Microbiol Lett. 2007;273(2):224-8. Abstract
2006
Angly FE, Felts B, Breitbart M, Salamon P, Edwards RA, Carlson C, et al. The marine viromes of four oceanic regions. PLoS Biol. 2006;4(11):e368. Abstract
2005
Angly FE, Rodriguez-Brito B, Bangor D, McNairnie P, Breitbart M, Salamon P, et al. PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information. BMC Bioinformatics. 2005;6:41. Abstract