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2013
Willner D, Hugenholtz P. From deep sequencing to viral tagging: Recent advances in viral metagenomics. Bioessays. 2013. Abstract
Willner DL, Hugenholtz P, Yerkovich ST, Tan ME, Daly JN, Lachner N, et al. Re-Establishment of Recipient-Associated Microbiota in the Lung Allograft is Linked to Reduced Risk of Bronchiolitis Obliterans Syndrome. Am J Respir Crit Care Med. 2013. Abstract
Jiang L, Willner D, Danoy P, Xu H, Brown MA. Comparison of the performance of two commercial genome-wide association study genotyping platforms in han chinese samples. G3 (Bethesda). 2013;3(1):23-9. Abstract
2012
Cassman N, Prieto-Davó A, Walsh K, Silva GG, Angly F, Akhter S, et al. Oxygen minimum zones harbour novel viral communities with low diversity. Environ Microbiol. 2012. Abstract
Lim YW, Schmieder R, Haynes M, Willner D, Furlan M, Youle M, et al. Metagenomics and metatranscriptomics: Windows on CF-associated viral and microbial communities. J Cyst Fibros. 2012. Abstract
Estrada K, Styrkarsdottir U, Evangelou E, Hsu Y-, Duncan EL, Ntzani EE, et al. Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture. Nature genetics. 2012. Abstract
Angly FE, Willner D, Rohwer F, Hugenholtz P, Tyson GW. Grinder: a versatile amplicon and shotgun sequence simulator. Nucleic acids research. 2012. Abstract
Willner D, Daly JN, Whiley D, Grimwood K, Wainwright CE, Hugenholtz P. Comparison of DNA extraction methods for microbial community profiling with an application to pediatric bronchoalveolar lavage samples. PLoS ONE. 2012;7(4):e34605. Abstract
2011
Willner D, Haynes MR, Furlan M, Hanson N, Kirby B, Lim YW, et al. Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung. American journal of respiratory cell and molecular biology. 2011. Abstract
Kelly LW, Barott KL, Dinsdale E, Friedlander AM, Nosrat B, Obura D, et al. Black reefs: iron-induced phase shifts on coral reefs. The ISME journal. 2011. Abstract
Willner D, Haynes MR, Furlan M, Schmieder R, Lim YW, Rainey PB, et al. Spatial distribution of microbial communities in the cystic fibrosis lung. The ISME journal. 2011. Abstract
Ng TF, Willner DL, Lim YW, Schmieder R, Chau B, Nilsson C, et al. Broad Surveys of DNA Viral Diversity Obtained through Viral Metagenomics of Mosquitoes. PLoS ONE. 2011;6(6):e20579. Abstract
2010
Willner D, Furlan M. Deciphering the role of phage in the cystic fibrosis airway. Virulence. 2010;1(4):309-13. Abstract
Willner D, Furlan M, Schmieder R, Grasis JA, Pride DT, Relman DA, et al. Microbes and Health Sackler Colloquium: Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity. Proceedings of the National Academy of Sciences of the United States of America. 2010. Abstract
Rodriguez-Brito B, Li L, Wegley L, Furlan M, Angly FE, Breitbart M, et al. Viral and microbial community dynamics in four aquatic environments. ISME J. 2010;4(6):739-51. Abstract
Su LY, Willner DL, Segall AM. An antimicrobial peptide that targets DNA repair intermediates in vitro inhibits Salmonella growth within murine macrophages. Antimicrob Agents Chemother. 2010;54(5):1888-99. Abstract
Allen B, Willner D, Oechel WC, Lipson D. Top-down control of microbial activity and biomass in an Arctic soil ecosystem. Environ Microbiol. 2010;12(3):642-8. Abstract
2009
Angly FE, Willner D, Prieto-Davó A, Edwards RA, Schmieder R, Vega-Thurber R, et al. The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes. PLoS Comput Biol. 2009;5(12):e1000593. Abstract
Thurber RV, Willner-Hall D, Rodriguez-Mueller B, Desnues C, Edwards RA, Angly FE, et al. Metagenomic analysis of stressed coral holobionts. Environ Microbiol. 2009;11(8):2148-63. Abstract
Willner D, Thurber RV, Rohwer F. Metagenomic signatures of 86 microbial and viral metagenomes. Environ Microbiol. 2009;11(7):1752-66. Abstract
Willner D, Furlan M, Haynes M, Schmieder R, Angly FE, Silva J, et al. Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals. PLoS ONE. 2009;4(10):e7370. Abstract
2008
Vega Thurber RL, Barott KL, Hall D, Liu H, Rodriguez-Mueller B, Desnues C, et al. Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa. Proc Natl Acad Sci USA. 2008;105(47):18413-8. Abstract
Dinsdale EA, Edwards RA, Hall D, Angly FE, Breitbart M, Brulc JM, et al. Functional metagenomic profiling of nine biomes. Nature. 2008;452(7187):629-32. Abstract
Desnues C, Rodriguez-Brito B, Rayhawk S, Kelley S, Tran T, Haynes M, et al. Biodiversity and biogeography of phages in modern stromatolites and thrombolites. Nature. 2008;452(7185):340-3. Abstract
Dinsdale EA, Pantos O, Smriga S, Edwards RA, Angly FE, Wegley L, et al. Microbial ecology of four coral atolls in the Northern Line Islands. PLoS ONE. 2008;3(2):e1584. Abstract