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2011
Webster NS, Cobb RE, Soo RM, Anthony SL, Battershill CN, Whalan S, et al. Bacterial community dynamics in the marine sponge Rhopaloeides odorabile under in situ and ex situ cultivation. Mar Biotechnol. 2011;13(2):296-304. Abstract
2009
Imelfort M, Edwards D. De novo sequencing of plant genomes using second-generation technologies. Brief Bioinformatics. 2009;10(6):609-18. Abstract
Bragg LM, Stone G. k-link EST clustering: evaluating error introduced by chimeric sequences under different degrees of linkage. Bioinformatics. 2009;25(18):2302-8. Abstract
2008
Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang RH, King N, et al. Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals. Nature. 2008;455(7217):1193-7. Abstract
Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang RH, King N, et al. Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals. Nature. 2008;455(7217):1193-7. Abstract
Dalevi D, Ivanova NN, Mavromatis K, Hooper SD, Szeto E, Hugenholtz P, et al. Annotation of metagenome short reads using proxygenes. Bioinformatics. 2008;24(16):i7-13. Abstract
Blank LM, Hugenholtz P, Nielsen LK. Evolution of the hyaluronic acid synthesis (has) operon in Streptococcus zooepidemicus and other pathogenic streptococci. J Mol Evol. 2008;67(1):13-22. Abstract
Kunin V, He S, Warnecke F, Peterson BS, Martin HG, Haynes M, et al. A bacterial metapopulation adapts locally to phage predation despite global dispersal. Genome Res. 2008;18(2):293-7. Abstract
Tyson GW, Banfield JF. Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses. Environ Microbiol. 2008;10(1):200-7. Abstract
2007
Allen EE, Tyson GW, Whitaker RJ, Detter JC, Richardson PM, Banfield JF. Genome dynamics in a natural archaeal population. Proc Natl Acad Sci USA. 2007;104(6):1883-8. Abstract
Eppley JM, Tyson GW, Getz WM, Banfield JF. Strainer: software for analysis of population variation in community genomic datasets. BMC Bioinformatics. 2007;8:398. Abstract
Kunin V, Sorek R, Hugenholtz P. Evolutionary conservation of sequence and secondary structures in CRISPR repeats. Genome Biol. 2007;8(4):R61. Abstract
2006
Baker BJ, Tyson GW, Webb RI, Flanagan J, Hugenholtz P, Allen EE, et al. Lineages of acidophilic archaea revealed by community genomic analysis. Science. 2006;314(5807):1933-5. Abstract
2004
Sangwan P, Chen X, Hugenholtz P, Janssen PH. Chthoniobacter flavus gen. nov., sp. nov., the first pure-culture representative of subdivision two, Spartobacteria classis nov., of the phylum Verrucomicrobia. Appl Environ Microbiol. 2004;70(10):5875-81. Abstract
Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, Richardson PM, et al. Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature. 2004;428(6978):37-43. Abstract
2003
Baker BJ, Hugenholtz P, Dawson SC, Banfield JF. Extremely acidophilic protists from acid mine drainage host Rickettsiales-lineage endosymbionts that have intervening sequences in their 16S rRNA genes. Appl Environ Microbiol. 2003;69(9):5512-8. Abstract
Zhang H, Sekiguchi Y, Hanada S, Hugenholtz P, Kim H, Kamagata Y, et al. Gemmatimonas aurantiaca gen. nov., sp. nov., a gram-negative, aerobic, polyphosphate-accumulating micro-organism, the first cultured representative of the new bacterial phylum Gemmatimonadetes phyl. nov. Int J Syst Evol Microbiol. 2003;53(Pt 4):1155-63. Abstract
Uzal FA, Hugenholtz P, Blackall LL, Petray S, Moss S, Assis RA, et al. PCR detection of Clostridium chauvoei in pure cultures and in formalin-fixed, paraffin-embedded tissues. Vet Microbiol. 2003;91(2-3):239-48. Abstract
2002
Sait M, Hugenholtz P, Janssen PH. Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys. Environ Microbiol. 2002;4(11):654-66. Abstract
1998
Dojka MA, Hugenholtz P, Haack SK, Pace NR. Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation. Appl Environ Microbiol. 1998;64(10):3869-77. Abstract
1997
Blackall LL, Rossetti S, Christensson C, Cunningham M, Hartman P, Hugenholtz P, et al. The characterization and description of representatives of 'G' bacteria from activated sludge plants. Lett Appl Microbiol. 1997;25(1):63-9. Abstract
Fuerst JA, Gwilliam HG, Lindsay M, Lichanska A, Belcher C, Vickers JE, et al. Isolation and molecular identification of planctomycete bacteria from postlarvae of the giant tiger prawn, Penaeus monodon. Appl Environ Microbiol. 1997;63(1):254-62. Abstract