Found 105 results
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Soo RM, Woodcroft B.J., Parks DH, Tyson GW, Hugenholtz P.  2015.  Back from the dead; the curious tale of the predatory cyanobacterium Vampirovibrio chlorellavorus.. PeerJ. 3:e968.
Parks DH, Imelfort M, Skennerton CT, Hugenholtz P, Tyson GW.  2015.  CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.. Genome research.
Tout J, Jeffries TC, Petrou K, Tyson GW, Webster NS, Garren M, Stocker R, Ralph PJ, Seymour JR.  2015.  Chemotaxis by natural populations of coral reef bacteria. The ISME Journal. 9(8):1764-1777.
Wang JTH, Daly JN, Willner DL, Patil J, Hall RA, Schembri MA, Tyson GW, Hugenholtz P.  2015.  Do you kiss your mother with that mouth? An authentic large-scale undergraduate research experience in mapping the human oral microbiome. Journal of microbiology & biology education. 16:50-60.
Skennerton CT, Barr JJ, Slater FR, Bond PL, Tyson GW.  2015.  Expanding our view of genomic diversity in C andidatus  Accumulibacter clades. Environmental Microbiology. 17(5):1574-1585.
Sekiguchi Y, Ohashi A, Parks DH, Yamauchi T, Tyson GW, Hugenholtz P.  2015.  First genomic insights into members of a candidate bacterial phylum responsible for wastewater bulking.. PeerJ. 3:e740.
Pantos O, Bongaerts P, Dennis PG, Tyson GW, Hoegh-Guldberg O.  2015.  Habitat-specific environmental conditions primarily control the microbiomes of the coral Seriatopora hystrix. The ISME Journal. 9(9):1916-1927.
Hu S, Zeng RJ, Haroon MF, Keller J, Lant PA, Tyson GW, Yuan Z.  2015.  A laboratory investigation of interactions between denitrifying anaerobic methane oxidation (DAMO) and anammox processes in anoxic environments.. Scientific reports. 5:8706.
Evans PN, Parks DH, Chadwick GL, Robbins SJ, Orphan VJ, Golding SD, Tyson GW.  2015.  Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics.. Science (New York, N.Y.). 350:434-8.
Voolstra CRobert, Miller DJohn, Ragan MA, Hoffmann A, Hoegh-Guldberg O, Bourne D, Ball E, Ying H, Foret S, Takahashi S et al..  2015.  The ReFuGe 2020 Consortium—using “omics” approaches to explore the adaptability and resilience of coral holobionts to environmental change. Frontiers in Marine Science.
Patil SA, Arends JBA, Vanwonterghem I, van Meerbergen J, Guo K, Tyson GW, Rabaey K.  2015.  Selective Enrichment Establishes a Stable Performing Community for Microbial Electrosynthesis of Acetate from CO 2. Environmental Science & Technology. 49(14):8833-8843.
Vanwonterghem I, Jensen PD, Rabaey K, Tyson GW.  2015.  Temperature and solids retention time control microbial population dynamics and volatile fatty acid production in replicated anaerobic digesters.. Scientific reports. 5:8496.
Susilawati R, Evans PN, Esterle JS, Robbins SJ, Tyson GW, Golding SD, Mares TE.  2015.  Temporal changes in microbial community composition during culture enrichment experiments with Indonesian coals. International Journal of Coal Geology. 137:66-76.
Waldor MK, Tyson GW, Borenstein E, Ochman H, Moeller A, B Finlay B, Kong HH, Gordon JI, Nelson KE, Dabbagh K et al..  2015.  Where Next for Microbiome Research? PLoS biology. 13:e1002050.
Angly FE, Fields CJ, Tyson GW.  2014.  The Bio-Community Perl toolkit for microbial ecology.. Bioinformatics (Oxford, England).
De Vrieze J, Gildemyn S, Arends JBA, Vanwonterghem I, Verbeken K, Boon N, Verstraete W, Tyson GW, Hennebel T, Rabaey K.  2014.  Biomass retention on electrodes rather than electrical current enhances stability in anaerobic digestion. Water Research. 54:211-221.
Angly FE, Dennis PG, Skarshewski A, Vanwonterghem I, Hugenholtz P, Tyson GW.  2014.  CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction.. Microbiome. 2:11.
Vanwonterghem I, Jensen PD, Dennis PG, Hugenholtz P, Rabaey K, Tyson GW.  2014.  Deterministic processes guide long-term synchronised population dynamics in replicate anaerobic digesters.. The ISME journal.
Mondav R, Woodcroft B.J., Kim E-H, McCalley CK, Hodgkins SB, Crill PM, Chanton J, Hurst GB, Verberkmoes NC, Saleska SR et al..  2014.  Discovery of a novel methanogen prevalent in thawing permafrost.. Nature communications. 5:3212.
Soo RM, Skennerton CT, Sekiguchi Y, Imelfort M, Paech SJ, Dennis PG, Steen JA, Parks DH, Tyson GW, Hugenholtz P.  2014.  An Expanded Genomic Representation of the Phylum Cyanobacteria.. Genome biology and evolution.
Skennerton CT, Barr JJ, Slater FR, Bond PL, Tyson GW.  2014.  Expanding our view of genomic diversity in Candidatus Accumulibacter clades.. Environmental microbiology.
Imelfort M, Parks DH, Woodcroft B.J., Dennis P, Hugenholtz P, Tyson GW.  2014.  GroopM: an automated tool for the recovery of population genomes from related metagenomes.. PeerJ. 2:e603.
Vanwonterghem I, Jensen PD, Ho DP, Batstone DJ, Tyson GW.  2014.  Linking microbial community structure, interactions and function in anaerobic digesters using new molecular techniques.. Current opinion in biotechnology. 27C:55-64.
Bragg L, Tyson GW.  2014.  Metagenomics using next-generation sequencing.. Methods in molecular biology (Clifton, N.J.). 1096:183-201.
McCalley CK, Woodcroft B.J., Hodgkins SB, Wehr RA, Kim E-H, Mondav R, Crill PM, Chanton JP, Rich VI, Tyson GW et al..  2014.  Methane dynamics regulated by microbial community response to permafrost thaw.. Nature. 514:478-81.



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