Found 189 results
Filters: Author is Hugenholtz, Philip  [Clear All Filters]
Angly FE, Dennis PG, Skarshewski A, Vanwonterghem I, Hugenholtz P, Tyson GW.  2014.  CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction.. Microbiome. 2:11.
Vanwonterghem I, Jensen PD, Dennis PG, Hugenholtz P, Rabaey K, Tyson GW.  2014.  Deterministic processes guide long-term synchronised population dynamics in replicate anaerobic digesters.. The ISME journal.
Mondav R, Woodcroft B.J., Kim E-H, McCalley CK, Hodgkins SB, Crill PM, Chanton J, Hurst GB, Verberkmoes NC, Saleska SR et al..  2014.  Discovery of a novel methanogen prevalent in thawing permafrost.. Nature communications. 5:3212.
Clingenpeel S, Schwientek P, Hugenholtz P, Woyke T.  2014.  Effects of sample treatments on genome recovery via single-cell genomics. The ISME Journal. 8(12):2546-2549.
Soo RM, Skennerton CT, Sekiguchi Y, Imelfort M, Paech SJ, Dennis PG, Steen JA, Parks DH, Tyson GW, Hugenholtz P.  2014.  An Expanded Genomic Representation of the Phylum Cyanobacteria.. Genome biology and evolution.
Göker M, Lu M, Fiebig A, Nolan M, Lapidus A, Tice H, Del Rio TGlavina, Cheng J-F, Han C, Tapia R et al..  2014.  Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279T), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia. Standards in Genomic Sciences. 9(3):1076-1088.
Göker M, Spring S, Scheuner C, Anderson I, Zeytun A, Nolan M, Lucas S, Tice H, Del Rio TGlavina, Cheng J-F et al..  2014.  Genome sequence of the Thermotoga thermarum type strain (LA3T) from an African solfataric spring. Standards in Genomic Sciences. 9(3):1105-1117.
Kyrpides NC, Hugenholtz P, Eisen JA, Woyke T, Göker M, Parker CT, Amann R, Beck BJ, Chain PSG, Chun J et al..  2014.  Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains. PLoS Biology. 12(8):e1001920.
Imelfort M, Parks DH, Woodcroft B.J., Dennis P, Hugenholtz P, Tyson GW.  2014.  GroopM: an automated tool for the recovery of population genomes from related metagenomes.. PeerJ. 2:e603.
Paungfoo-Lonhienne C, Lonhienne TGA, Yeoh YKit, Webb RI, Lakshmanan P, Chan CXin, Lim P-E, Ragan MA, Schmidt S, Hugenholtz P.  2014.  A new species of Burkholderia isolated from sugarcane roots promotes plant growth.. Microbial biotechnology. 7:142-54.
Willner D, Low S, Steen JA, George N, Nimmo GR, Schembri MA, Hugenholtz P.  2014.  Single clinical isolates from acute uncomplicated urinary tract infections are representative of dominant in situ populations.. mBio. 5
Parks DH, Tyson GW, Hugenholtz P, Beiko RG.  2014.  STAMP: statistical analysis of taxonomic and functional profiles.. Bioinformatics (Oxford, England).
Deng L, J. Ignacio-Espinoza C, Gregory AC, Poulos BT, Weitz JS, Hugenholtz P, Sullivan MB.  2014.  Viral tagging reveals discrete populations in Synechococcus viral genome sequence space. Nature. 513(7517):242-245.
Lonhienne T, Mason MG, Ragan MA, Hugenholtz P, Schmidt S, Paungfoo-Lonhienne C.  2014.  Yeast as a Biofertilizer Alters Plant Growth and Morphology. Crop Science. 54(2):785.
Haroon MF, Hu S, Shi Y, Imelfort M, Keller J, Hugenholtz P, Yuan Z, Tyson GW.  2013.  Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage.. Nature.
Flowers JJ, He S, Malfatti S, Del Rio TGlavina, Tringe SG, Hugenholtz P, McMahon KD.  2013.  Comparative genomics of two ‘Candidatus Accumulibacter’ clades performing biological phosphorus removal. The ISME Journal. 7(12):2301-2314.
Stackebrandt E, Zeytun A, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng J-F, Tapia R, Goodwin LA et al..  2013.  Complete genome sequence of Coriobacterium glomerans type strain (PW2T) from the midgut of Pyrrhocoris apterus L. (red soldier bug). Standards in Genomic Sciences. 8(1):15-25.
Liolos K, Abt B, Scheuner C, Teshima H, Held B, Lapidus A, Nolan M, Lucas S, Deshpande S, Cheng J-F et al..  2013.  Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692T) from the alkaline Lake Magadi in the East African Rift. Standards in Genomic Sciences. 8(2):165-176.
Mavromatis K, Stackebrandt E, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng J-F, Tapia R et al..  2013.  Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGAT). Standards in Genomic Sciences. 8(1):47-57.
Braff WA, Willner D, Hugenholtz P, Rabaey K, Buie CR.  2013.  Dielectrophoresis-based discrimination of bacteria at the strain level based on their surface properties.. PloS one. 8:e76751.



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