Found 183 results
Filters: Author is Hugenholtz, Philip  [Clear All Filters]
2012
Han C, Kotsyurbenko O, Chertkov O, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng J-F et al..  2012.  Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1T). Standards in Genomic Sciences. 6(1):94-103.
Abt B, Han C, Scheuner C, Lu M, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng J-F et al..  2012.  Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1T) reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta. Standards in Genomic Sciences. 6(2):194-209.
Anderson I, Saunders E, Lapidus A, Nolan M, Lucas S, Tice H, Del Rio TGlavina, Cheng J-F, Han C, Tapia R et al..  2012.  Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812T). Standards in Genomic Sciences. 6(2):155-164.
Lundberg DS, Lebeis SL, Paredes SHerrera, Yourstone S, Gehring J, Malfatti S, Tremblay J, Engelbrektson A, Kunin V, del Rio TGlavina et al..  2012.  Defining the core Arabidopsis thaliana root microbiome. Nature. 488(7409):86-90.
Lundberg DS, Lebeis SL, Paredes SHerrera, Yourstone S, Gehring J, Malfatti S, Tremblay J, Engelbrektson A, Kunin V, Del Rio TGlavina et al..  2012.  Defining the core Arabidopsis thaliana root microbiome.. Nature. 488:86-90.
Bragg L, Stone G, Imelfort M, Hugenholtz P, Tyson GW.  2012.  Fast, accurate error-correction of amplicon pyrosequences using Acacia.. Nature methods. 9:425-6.
Riedel T, Held B, Nolan M, Lucas S, Lapidus A, Tice H, Del Rio TGlavina, Cheng J-F, Han C, Tapia R et al..  2012.  Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282T). Standards in Genomic Sciences. 7(1):107-119.
Anderson I, Munk C, Lapidus A, Nolan M, Lucas S, Tice H, Del Rio TGlavina, Cheng J-F, Han C, Tapia R et al..  2012.  Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8T). Standards in Genomic Sciences. 7(2):210-220.
Anderson I, Held B, Lapidus A, Nolan M, Lucas S, Tice H, Del Rio TGlavina, Cheng J-F, Han C, Tapia R et al..  2012.  Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4T). Standards in Genomic Sciences. 6(2):174-184.
Göker M, Saunders E, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng J-F, Han C, Tapia R et al..  2012.  Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314T). Standards in Genomic Sciences. 6(2):230-239.
Riedel T, Held B, Nolan M, Lucas S, Lapidus A, Tice H, Del Rio TGlavina, Cheng J-F, Han C, Tapia R et al..  2012.  Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801T). Standards in Genomic Sciences. 7(1):120-130.
Angly FE, Willner D, Rohwer F, Hugenholtz P, Tyson GW.  2012.  Grinder: a versatile amplicon and shotgun sequence simulator.. Nucleic acids research.
Angly FE, Willner D, Rohwer F, Hugenholtz P, Tyson GW.  2012.  Grinder: a versatile amplicon and shotgun sequence simulator. Nucleic Acids Research. 40(12):e94-e94.
Werner JJ, Koren O, Hugenholtz P, DeSantis TZ, Walters WA, J Caporaso G, Angenent LT, Knight R, Ley RE.  2012.  Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys. The ISME Journal. 6(1):94-103.
McDonald D, Price MN, Goodrich J, Nawrocki EP, DeSantis TZ, Probst A, Andersen GL, Knight R, Hugenholtz P.  2012.  An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. The ISME Journal. 6(3):610-618.
Mavromatis K, Chertkov O, Lapidus A, Nolan M, Lucas S, Tice H, Del Rio TGlavina, Cheng J-F, Han C, Tapia R et al..  2012.  Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1). Standards in Genomic Sciences. 6(2):210-219.
2011
Reddy AP, Allgaier M, Singer SW, Hazen TC, Simmons BA, Hugenholtz P, VanderGheynst JS.  2011.  Bioenergy feedstock-specific enrichment of microbial populations during high-solids thermophilic deconstruction. Biotechnology and Bioengineering. 108(9):2088-2098.
Reddy AP, Allgaier M, Singer SW, Hazen TC, Simmons BA, Hugenholtz P, VanderGheynst JS.  2011.  Bioenergy feedstock-specific enrichment of microbial populations during high-solids thermophilic deconstruction.. Biotechnology and bioengineering.
Pati A, Gronow S, Zeytun A, Lapidus A, Nolan M, Hammon N, Deshpande S, Cheng J-F, Tapia R, Han C et al..  2011.  Complete genome sequence of Bacteroides helcogenes type strain (P 36-108T). Standards in Genomic Sciences. 4(1):45-53.
Gronow S, Held B, Lucas S, Lapidus A, Del Rio TGlavina, Nolan M, Tice H, Deshpande S, Cheng J-F, Pitluck S et al..  2011.  Complete genome sequence of Bacteroides salanitronis type strain (BL78T). Standards in Genomic Sciences. 4(2):191-199.
Pitluck S, Sikorski J, Zeytun A, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng J-F, Tapia R et al..  2011.  Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1T). Standards in Genomic Sciences. 4(1):54-62.
Abt B, Lu M, Misra M, Han C, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng J-F, Tapia R et al..  2011.  Complete genome sequence of Cellulophaga algicola type strain (IC166T). Standards in Genomic Sciences. 4(1):72-80.
Pati A, Abt B, Teshima H, Nolan M, Lapidus A, Lucas S, Hammon N, Deshpande S, Cheng J-F, Tapia R et al..  2011.  Complete genome sequence of Cellulophaga lytica type strain (LIM-21T). Standards in Genomic Sciences. 4(2):221-232.
Pukall R, Zeytun A, Lucas S, Lapidus A, Hammon N, Deshpande S, Nolan M, Cheng J-F, Pitluck S, Liolios K et al..  2011.  Complete genome sequence of Deinococcus maricopensis type strain (LB-34T). Standards in Genomic Sciences. 4(2):163-172.
Pagani I, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng J-F, Chertkov O, Davenport K, Tapia R et al..  2011.  Complete genome sequence of Desulfobulbus propionicus type strain (1pr3T). Standards in Genomic Sciences. 4(1):100-110.

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