Found 350 results
Angly FE, Fields CJ, Tyson GW.  2014.  The Bio-Community Perl toolkit for microbial ecology.. Bioinformatics (Oxford, England).
De Vrieze J, Gildemyn S, Arends JBA, Vanwonterghem I, Verbeken K, Boon N, Verstraete W, Tyson GW, Hennebel T, Rabaey K.  2014.  Biomass retention on electrodes rather than electrical current enhances stability in anaerobic digestion. Water Research. 54:211-221.
Zaugg J, Gumulya Y, Gillam EMJ, Bodén M.  2014.  Computational tools for directed evolution: a comparison of prospective and retrospective strategies. Directed Evolution Library Creation: Methods and Protocols. :315–333.
Angly FE, Dennis PG, Skarshewski A, Vanwonterghem I, Hugenholtz P, Tyson GW.  2014.  CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction.. Microbiome. 2:11.
Vanwonterghem I, Jensen PD, Dennis PG, Hugenholtz P, Rabaey K, Tyson GW.  2014.  Deterministic processes guide long-term synchronised population dynamics in replicate anaerobic digesters.. The ISME journal.
Mondav R, Woodcroft B.J., Kim E-H, McCalley CK, Hodgkins SB, Crill PM, Chanton J, Hurst GB, Verberkmoes NC, Saleska SR et al..  2014.  Discovery of a novel methanogen prevalent in thawing permafrost.. Nature communications. 5:3212.
Clingenpeel S, Schwientek P, Hugenholtz P, Woyke T.  2014.  Effects of sample treatments on genome recovery via single-cell genomics. The ISME Journal. 8(12):2546-2549.
de Cárcer DAguirre, Angly FE, Alcamí A.  2014.  Evaluation of viral genome assembly and diversity estimation in deep metagenomes.. BMC genomics. 15:989.
Soo RM, Skennerton CT, Sekiguchi Y, Imelfort M, Paech SJ, Dennis PG, Steen JA, Parks DH, Tyson GW, Hugenholtz P.  2014.  An Expanded Genomic Representation of the Phylum Cyanobacteria.. Genome biology and evolution.
Skennerton CT, Barr JJ, Slater FR, Bond PL, Tyson GW.  2014.  Expanding our view of genomic diversity in Candidatus Accumulibacter clades.. Environmental microbiology.
Madhavan T.PVipin, Steen J.A, Hugenholtz P., Sakellaris H..  2014.  Genome Sequence of Enterotoxigenic Escherichia coli Strain B2C. Genome Announcements. 2(2):e00247-14-e00247-14.
Göker M, Lu M, Fiebig A, Nolan M, Lapidus A, Tice H, Del Rio TGlavina, Cheng J-F, Han C, Tapia R et al..  2014.  Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279T), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia. Standards in Genomic Sciences. 9(3):1076-1088.
Göker M, Spring S, Scheuner C, Anderson I, Zeytun A, Nolan M, Lucas S, Tice H, Del Rio TGlavina, Cheng J-F et al..  2014.  Genome sequence of the Thermotoga thermarum type strain (LA3T) from an African solfataric spring. Standards in Genomic Sciences. 9(3):1105-1117.
Kyrpides NC, Hugenholtz P, Eisen JA, Woyke T, Göker M, Parker CT, Amann R, Beck BJ, Chain PSG, Chun J et al..  2014.  Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains. PLoS Biology. 12(8):e1001920.
Imelfort M, Parks DH, Woodcroft B.J., Dennis P, Hugenholtz P, Tyson GW.  2014.  GroopM: an automated tool for the recovery of population genomes from related metagenomes.. PeerJ. 2:e603.
Cao MDuc, Tasker E, Willadsen K, Imelfort M, Vishwanathan S, Sureshkumar S, Balasubramanian S, Bodén M.  2014.  Inferring short tandem repeat variation from paired-end short reads.. Nucleic acids research. 42:e16.
Vanwonterghem I, Jensen PD, Ho DP, Batstone DJ, Tyson GW.  2014.  Linking microbial community structure, interactions and function in anaerobic digesters using new molecular techniques.. Current opinion in biotechnology. 27C:55-64.
Bragg L, Tyson GW.  2014.  Metagenomics using next-generation sequencing.. Methods in molecular biology (Clifton, N.J.). 1096:183-201.
McCalley CK, Woodcroft B.J., Hodgkins SB, Wehr RA, Kim E-H, Mondav R, Crill PM, Chanton JP, Rich VI, Tyson GW et al..  2014.  Methane dynamics regulated by microbial community response to permafrost thaw.. Nature. 514:478-81.
Paungfoo-Lonhienne C, Lonhienne TGA, Yeoh YKit, Webb RI, Lakshmanan P, Chan CXin, Lim P-E, Ragan MA, Schmidt S, Hugenholtz P.  2014.  A new species of Burkholderia isolated from sugarcane roots promotes plant growth.. Microbial biotechnology. 7:142-54.
Willner D, Low S, Steen JA, George N, Nimmo GR, Schembri MA, Hugenholtz P.  2014.  Single clinical isolates from acute uncomplicated urinary tract infections are representative of dominant in situ populations.. mBio. 5
Parks DH, Tyson GW, Hugenholtz P, Beiko RG.  2014.  STAMP: statistical analysis of taxonomic and functional profiles.. Bioinformatics (Oxford, England).
Deng L, J. Ignacio-Espinoza C, Gregory AC, Poulos BT, Weitz JS, Hugenholtz P, Sullivan MB.  2014.  Viral tagging reveals discrete populations in Synechococcus viral genome sequence space. Nature. 513(7517):242-245.
Lonhienne T, Mason MG, Ragan MA, Hugenholtz P, Schmidt S, Paungfoo-Lonhienne C.  2014.  Yeast as a Biofertilizer Alters Plant Growth and Morphology. Crop Science. 54(2):785.



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